Package: palaeoSig 2.1-5

palaeoSig: Significance Tests for Palaeoenvironmental Reconstructions

Several tests of quantitative palaeoenvironmental reconstructions from microfossil assemblages, including the null model tests of the statistically significant of reconstructions developed by Telford and Birks (2011) <doi:10.1016/j.quascirev.2011.03.002>, and tests of the effect of spatial autocorrelation on transfer function model performance using methods from Telford and Birks (2009) <doi:10.1016/j.quascirev.2008.12.020> and Trachsel and Telford (2016) <doi:10.5194/cp-12-1215-2016>. Age-depth models with generalized mixed-effect regression from Heegaard et al (2005) <doi:10.1191/0959683605hl836rr> are also included.

Authors:Richard Telford [aut, cre, cph], Mathias Trachsel [ctb]

palaeoSig_2.1-5.tar.gz
palaeoSig_2.1-5.zip(r-4.7-any)palaeoSig_2.1-5.zip(r-4.6-any)palaeoSig_2.1-5.zip(r-4.5-any)
palaeoSig_2.1-5.tgz(r-4.6-any)palaeoSig_2.1-5.tgz(r-4.5-any)
palaeoSig_2.1-5.tar.gz(r-4.7-any)palaeoSig_2.1-5.tar.gz(r-4.6-any)
palaeoSig_2.1-5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
palaeoSig/json (API)

# Install 'palaeoSig' in R:
install.packages('palaeoSig', repos = c('https://richardjtelford.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/richardjtelford/palaeosig/issues

Pkgdown/docs site:https://richardjtelford.github.io

Datasets:
  • arctic.env - Arctic Pollen and associated environmental data
  • arctic.pollen - Arctic Pollen and associated environmental data
  • Atlantic - Atlantic core-top foram assemblages
  • STOR - Storsandsvatnet

On CRAN:

Conda:

5.67 score 3 stars 52 scripts 335 downloads 3 mentions 15 exports 43 dependencies

Last updated from:388cba57f2. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK144
source / vignettesOK216
linux-releaseOK166
macos-releaseOK107
macos-oldrelOK125
windows-develOK110
windows-releaseOK100
windows-oldrelOK109
wasm-releaseOK105

Exports:abundancesagelmeanamorphcentipede_plotcor.mat.funcoverage_plotHill.N2.corejointsigmake.envmake.setmulti.matobs.corrandomTFrnespecies

Dependencies:assertrcliclustercpp11dplyrfarverforcatsgenericsggplot2ggrepelgluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvnlmepermutepillarpkgconfigpurrrR6RColorBrewerRcppriojarlangS7scalesstringistringrTeachingDemostibbletidyrtidyselectutf8vctrsveganviridisLitewithr

H-block cross-validation
1. Spatially independent test set | 2. Variogram range | 3. Variance explained | References
Rendered fromh-block-crossvalidation.Rmdusingknitr::rmarkdown

Last update: 2025-07-28
Started: 2019-06-20

randomTF on spatially structured environments
Data | Variogram | Kriging | References
Rendered fromrandomTF-spatial.Rmdusingknitr::rmarkdown

Last update: 2025-07-25
Started: 2023-02-12